
Connect Amazon and QuickBooks to the Synder app.
Personalize Synder to align perfectly with your business needs.
Enjoy streamlined bookkeeping and smooth reconciliation.
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Synder connects to Amazon Seller Central and automatically syncs the full transaction picture into QuickBooks: orders, refunds, fees, reimbursements, payouts, and FBA/FBM activity, using settlement reports and Amazon’s Financial Events API.
Choose Per Transaction sync for detailed Amazon orders with SKUs, quantities, and itemized fees, or Summary Sync for a single daily, monthly, or payout-level entry in QuickBooks, with safe rollback in both modes.
Synder breaks down Amazon settlement data by fee type – fulfillment, storage, ads, shipping, reimbursements – and automatically maps each to the correct QuickBooks account, so your P&L shows true Amazon costs, not one lumped expense.
Synder records Amazon activity in a clearing account and posts a matching transfer when the payout arrives, so bank deposits match QuickBooks exactly, even for multicurrency payouts without FX rounding issues.
Upload your product costs once, and Synder takes it from there, automatically calculating COGS for each sale, updating inventory per unit sold, matching SKUs across FBA and FBM, and tracking storage, removal, and inbound fees separately so nothing gets lumped together.
Synder records Amazon-collected and remitted sales tax as a separate non-taxable line item with a corresponding expense, so Sales Tax Payable stays accurate and your books reflect tax handled by Amazon without manual adjustments or overstated liabilities.
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To find the best solution for your business, book a call with our accounting automation expert. We'll dive into your needs and show how Synder can optimize your bookkeeping processes. Let us walk you through it!


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Explore accountants’ pageSOC 2 Type 2 certified, GDPR and HIPAA compliant, with end-to-end encryption built in. Synder keeps your data secure, helps you pass audits, and scales safely as you grow.
Synder's support team knows ecommerce accounting inside and out. Get help whenever you need it - chat, email, video call, or screen share. You're never stuck sorting things out alone.
Set up transactions exactly how you need them: rename line items, pull in custom data, adjust tax codes, and map everything to match your workflow perfectly.
Synder breaks down revenue by product, location, payment method, or date, from monthly snapshots to year-end reports. Get the data you need to make decisions.
"Of all the apps that I use to help make QuickBooks more functional, Synder is the one I have the least complaints about. Before Synder, when our bookkeeper had to do it manually, it was taking between 5-10 hours a week of importing data, adding data, changing forms and sheets. With over 150k records now processed automatically, it's been a huge savings of both time and money."

Intuit's Amazon Marketplace Connector handles basic order, refund, and payout imports into QuickBooks, but it doesn't break out Amazon fees in detail, doesn't support multi-currency reconciliation, and the net figures it posts often don't line up cleanly with your actual bank deposit. Synder parses the full Amazon settlement report, categorizing each fee type separately, matching payouts to your bank via a clearing account, handling marketplace facilitator tax, tracking COGS, and connecting Amazon alongside 30+ other platforms in the same QuickBooks account.
Setting up the Amazon Seller Central and QuickBooks integration in Synder requires no technical background. You'll need an active Amazon Selling Plan with API access (Individual plans don't include it) plus admin rights to authorize the connection on both sides. From there, Synder handles the data flow directly, pulling from Amazon's settlement reports without any manual exports or imports on your end.
Yes, you can run Amazon, Shopify, eBay, Walmart, Etsy, WooCommerce, and 25+ other platforms through a single Synder account, all feeding into the same QuickBooks company. Each platform gets its own mapping and clearing account, so channels stay cleanly separated in your books while the overall financial picture is consolidated in one place. For multichannel sellers managing several revenue streams at once, this means one reconciliation workflow rather than five.
Synder processes all Amazon orders of any fulfillment type. It captures accurately the FBA-specific fees that Amazon reports in its settlement data: inbound transportation, storage, removal orders, disposal, and inventory reimbursements for warehouse damage or lost goods. These are recorded as distinct transaction types rather than grouped into a single expense line, because that's how Amazon surfaces them.
In the Per Transaction sync mode, Amazon orders come into QuickBooks as individual sales records with full order-level detail attached. Synder can then pre-match those records to existing open invoices and close them automatically when payment is received, cutting out the manual step of tracking which payment belongs to which invoice. This makes it a practical setup for wholesale or B2B sellers who invoice business customers through QuickBooks rather than collecting payment at the point of sale.
The connection uses OAuth authorization, meaning Synder never sees or stores your Amazon login credentials – you approve access directly through Amazon's own authentication flow. On the data side, Synder is SOC 2 Type 2 certified with end-to-end encryption, and is both GDPR and HIPAA ready. More than 5,000 businesses and 200 accounting firms rely on Synder to process sensitive financial data across multiple platforms, so the infrastructure is built for that level of trust.
Synder refunds are matched to their original order by ID, so they land in QuickBooks as a clear offset to the original sale rather than an unexplained credit floating in your accounts. Any fees associated with the return, such as return processing charges, get their own category rather than being netted against the refund amount. For FBA sellers, items that come back into sellable condition are tracked so your inventory count and cost basis stay accurate, and reimbursements from Amazon for lost or damaged goods are picked up from the Financial Events API and recorded in the appropriate accounts.
Yes, Synder can import historical data from the Amazon marketplace, allowing you to generate financial reports for past periods. However, due to API limitations, there are time constraints on how far back you can go. For an Amazon business account, you can import up to 1 year of historical sales data and 2 years of historical payout data.
Synder allows users to connect multiple platforms, recording information from each in separate accounts within QuickBooks Online. If you use a payment platform other than Amazon Pay, it's recommended to connect it to Synder as well. This ensures that accurate data from all sources is recorded and stored in one place.
The tool also supports integration with other sales channels, providing a comprehensive solution for managing your online business finances.
Yes. With the QuickBooks Amazon integration, Synder can sync international payments in the necessary currency right into the Intuit QuickBooks account. Depending on the home currency you've chosen in Intuit QuickBooks, Synder records transactions in their original currency from the payment platform (Amazon Pay or any other connected platform) and converts these payments to your chosen home currency using the exchange rate provided by Amazon or the respective platform.
Synder offers an accountant directory featuring a curated list of trusted professionals who specialize in various marketplaces including Amazon. These experts are ready to assist you with any accounting needs you may have. Synder’s directory includes filtration by platform integrations, locations, and areas of expertise to find the perfect match for your business.