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Adapts to your workflow

Intuit Enterprise Suite Shopify Integration:

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Manage accounting of multiple Shopify stores across entities from one dashboard
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Categorize Shopify transactions across up to 20 dimensions
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Track Shopify Payments, PayPal, Stripe, and other gateways separately
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Sync inventory and COGS across stores and entities
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Automate Shopify reconciliation to speed up the month-end close

How it works

Financial transaction table from Synder showing transaction type, integration, date, amount, and synced status with logos for Stripe, Amazon, Walmart, Shopify, Square, and Paypal.Woman and bookkeeping happy with correct numbers

1. Integrate

Connect Shopify and Intuit Enterprise Suite to the Synder app.

2. Customize

Personalize Synder to align perfectly with your business needs.

3. Reconcile

Enjoy streamlined bookkeeping and smooth reconciliation.

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What you get with Shopify and Intuit Enterprise Suite integration

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What you get with Shopify and Intuit Enterprise Suite integration

Centralized multi-entity management

Account for all Shopify stores across Intuit Enterprise Suite through a single Synder integration. Different stores can be assigned to separate entities or dimensions, with consolidated reporting and support for intercompany inventory transfers when stock moves between entities.

Advanced transaction categorization

Organize Shopify transactions across up to 20 dimensions beyond basic classes. Group sales by channel, store, product, payment gateway, customer type, or department to clearly understand Shopify revenue and profitability.

Multi-channel payment gateway tracking

Separate Shopify Payments, PayPal, Stripe, and other gateways so fees, payouts, and chargebacks are tracked independently. Use dedicated clearing accounts per payment method and allocate payments across entities for clean reconciliation and clear visibility by gateway.

Inventory & COGS tracking at scale

Keep inventory quantities and cost of goods sold in sync across stores and entities. Update inventory automatically per transaction, calculate COGS by product or variant, and support multi-location stock, bundles, and entity-specific product mapping.

Automated Shopify reconciliation

Cut month-end close from days to hours by automating Shopify reconciliation across entities. Match payouts to bank deposits, reconcile clearing accounts by entity, and automatically record fees, refunds, discounts, and shipping income in one streamlined process.

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Book a demo with our specialist

To find the best solution for your business, book a call with our accounting automation expert. We'll dive into your needs and show how Synder can optimize your bookkeeping processes. Let us walk you through it!

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Shopify + other platforms you use

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30+ pre-built integrations, unlimited custom builds
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Easy multichannel reconciliation
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Unified financial reporting across all platforms
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Why should you choose Synder?

Compliance-first security

SOC 2 Type 2 certified, GDPR and HIPAA compliant, with end-to-end encryption built in. Synder keeps your data secure, helps you pass audits, and scales safely as you grow.

Reliable support

Synder's support team knows ecommerce accounting inside and out. Get help whenever you need it - chat, email, video call, or screen share. You're never stuck sorting things out alone.

Committed to your needs sync

Set up transactions exactly how you need them: rename line items, pull in custom data, adjust tax codes, and map everything to match your workflow perfectly.

Detailed reporting

Synder breaks down revenue by product, location, payment method, or date, from monthly snapshots to year-end reports. Get the data you need to make decisions.

What other Synder users say

"Synder helped us automate what was previously a very manual process. Instead of having to manually duplicate information between Shopify and QuickBooks, we can now focus on adding products to one system and let Synder handle the rest. The customer service team has been fantastic, they were really calm and easy to work with during implementation, and I really appreciate the monthly reporting emails and alerts when something doesn't sync properly. Overall, it's been a real breakthrough for keeping our books clean and our team focused on serving customers.”

Cassandra Tiltack
Head of Customer Operations, SleepEh
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