

Connect Stripe and QuickBooks to the Synder app.
Personalize Synder to align perfectly with your business needs.
Enjoy streamlined bookkeeping and smooth reconciliation.

Every Stripe transaction: payments, processing fees, сonnect fees, refunds, and chargebacks, flows into QuickBooks automatically and gets recorded in its own account for clean gross vs. net revenue visibility.
Synder records sales tax to the correct liability accounts, splitting amounts by state for US businesses or mapping them to tax codes for non-US QuickBooks. When Stripe withholds marketplace facilitator tax, Synder records it as a non-taxable line so it doesn’t inflate your Sales Tax Payable.
Synder matches incoming Stripe payments to open QuickBooks invoices and closes them automatically the moment payment is received. Voided invoices get a credit memo, uncollectible ones are rolled back, and customer credits are applied as negative line items without manual work.
Recurring Stripe payments sync with each billing cycle, with upgrades, downgrades, and cancellations tracked as they happen. For annual plans, Synder RevRec builds GAAP-compliant recognition schedules automatically, moving deferred revenue to income each month with prorations included.
Map Stripe products to existing QuickBooks items by name or SKU, or let Synder create them automatically. Smart Rules route transactions to the right income accounts, apply classes and locations, and handle edge cases like financing paydowns automatically.
Import past Stripe transactions as far back as Stripe stores them, and categorize them using your existing mapping settings from day one. No manual rebuilding – Synder’s Stripe to QuickBooks integration picks up where your old process left off.

To find the best solution for your business, book a call with our accounting automation expert. We'll dive into your needs and show how Synder can optimize your bookkeeping processes. Let us walk you through it!


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Synder's support team knows ecommerce accounting inside and out. Get help whenever you need it - chat, email, video call, or screen share. You're never stuck sorting things out alone.
Set up transactions exactly how you need them: rename line items, pull in custom data, adjust tax codes, and map everything to match your workflow perfectly.
Synder breaks down revenue by product, location, payment method, or date, from monthly snapshots to year-end reports. Get the data you need to make decisions.
"I don't need to go back and check transactions one by one in Stripe anymore. All of the invoices and payments automatically go to QuickBooks, which makes the whole reconciliation process much easier. I just need to go there once at the end of the month and check the balance—that’s it. That's why I offer Synder to any client who uses Stripe."

Synder handles Stripe and QuickBooks integration reconciliation through a clearing account that mirrors your Stripe balance. Every payment, fee, and refund is recorded there first, then Synder transfers the exact net payout amount to your checking account when Stripe pays out, so when the deposit appears in your bank feed, the amounts already match, and you just click "Match".
In a QuickBooks Stripe integration, processing fees, сonnect fees, and fee refunds are automatically pulled out of revenue and posted as expense transactions in QuickBooks. Each fee type is mapped to the expense account you define in Synder, giving you a clear view of gross versus net revenue on your P&L without manual adjustments. For UK businesses where Stripe fees include VAT, Synder records the fee and its VAT component as separate lines. In that scenario, use a Smart Rule to send the VAT line to its own account so it isn’t counted twice.
Yes, for 15 days. Synder offers a free trial with full access to all Stripe QuickBooks integration features – no credit card required. During the trial, you can sync live transactions, configure Smart Rules, test invoice matching, and verify that reconciliation works for your specific setup before committing to a plan. If you want to see the workflow before signing up, demo sessions are also available.
The Stripe to QuickBooks integration syncs recurring Stripe charges automatically with each billing cycle, tracking upgrades, downgrades, and cancellations as they happen in Stripe. For GAAP-compliant revenue recognition, Synder RevRec defers annual subscription revenue on the balance sheet and recognizes it in equal monthly amounts on the P&L over the service period, fully in line with ASC 606. Prorations and mid-cycle changes are handled automatically.
QuickBooks has no native connection to Stripe, so transactions don't flow in automatically without a third-party tool. The Stripe integration QuickBooks setup through Synder fills that gap: once connected, new Stripe payments, refunds, and fees sync to QuickBooks on an hourly basis in the Per Transaction mode, or as a single daily, monthly, or per-payout entry in the Summary Sync mode. Either way, the data arrives categorized and ready for reconciliation without any manual imports.
Synder syncs open Stripe invoices to QuickBooks and automatically applies incoming payments to close them the moment funds are received. To match Stripe payments to the right customers, configure the Customer Name Search Priority setting in Synder, which controls which Stripe field (name, email, or metadata) is used to identify the customer in QuickBooks.
Synder is an accounting software solution that serves as a bridge between payment processing platforms, online business channels, POS systems, etc., and accounting software. The tool stores the records of ongoing and historical transactions from the connected platforms and transfers them to the books. Synder’s main purpose is to provide its users with proper and detailed financial information, greatly simplifying tax season preparation.
Synder is a verified partner for Stripe and QuickBooks software and is available from the Stripe app marketplace and the QuickBooks app store.
Among Synder’s key features is the possibility to sync Stripe transactions, connect multiple platforms to a single account, prepare for a reconciliation process with an actual bank account, track multicurrency transactions, and monitor inventory and Cost of Goods Sold (COGS). In addition to that, its core functionality is highly customizable, allowing users to tailor the tool to their specific accounting needs. Once properly set up, this tool becomes essential for anyone needing accurate, automated accounting management.
Synder records Stripe online payments, financial paydowns, adjustments, and transfers—almost every transaction type from a Stripe account to QuickBooks Online.
The transaction data sync engine automatically imports all the necessary Stripe payment details, including sales amounts, taxes, Stripe fees, shipping, and discounts. By tracking both ongoing and historical transactions, Synder provides a real-time snapshot of your finances. The tool captures every detail, ensuring that the final reports in QuickBooks Online comprehensively reflect all relevant information regarding your company income and expenses.
Absolutely! Synder integrates with over 30 platforms, including payment processing systems, online sales channels, POS systems, and more. This flexibility allows you to manage your business finances seamlessly across various platforms. Additionally, Synder now supports syncing data to four major accounting systems: QuickBooks Online, QuickBooks Desktop, Sage Intacct, NetSuite and Xero.
Specifically for Stripe, Synder offers robust support for integration with all four mentioned accounting systems. This integration comes with a suite of powerful features, enabling you to handle your Stripe transactions efficiently and effectively within your chosen accounting platform.
Yes. With Synder, you can set up specific triggers and actions for recurring situations, ensuring your accounting is both efficient and accurate. For instance, Synder can automatically apply taxes to your transactions based on the location or shipping information, removing the manual effort and potential for errors.
This level of Synder’s automation extends beyond tax application. You can customize your Stripe-QuickBooks integration to suit your needs, from auto-categorizing income and fees to sending smart Stripe invoice due date reminders to your customers.
The best part is that Synder offers pre-made templates for the most common scenarios, such as setting Expense Category based on Description or setting Product based on the Product name in Invoice, so you don't have to start from scratch. You can easily enable the available templates or slightly modify them according to your specific needs.
Yes, Synder provides its users with sales tax settings that let you customize the preferences to manage the tax codes. As for QuickBooks Online, you can categorize your sales as taxable and non-taxable transactions and apply the right tax rate based on the country your company is located in.
Yes. For the Stripe integration, you have multiple options to choose from based on your company’s needs and accounting practices. You can either create individual accounts in QuickBooks Online for each currency or consolidate all your multicurrency transactions in a single account.
Synder creates records based on the transactions’ original currency in your QuickBooks Online account and converts them to your home currency with the rate taken from Stripe or another payment platform through which the transactions were made. This automated conversion process helps maintain accurate financial records and ensures that your accounting reflects the true value of your transactions, regardless of currency fluctuations.
You should absolutely do it! We believe in showing, not just telling. See firsthand how Synder can streamline your accounting processes between Stripe and QuickBooks Online with our free 15-day trial and experience all the features provided yourself.
Overwhelmed by payments and Stripe accounting? Don't worry! Our support team will guide you through onboarding, so you can explore Synder hassle-free. Reach out with any questions about integrating Stripe with QuickBooks Online. Or, if you prefer a collective experience, join our Weekly Public Demo to see Synder in action with other curious folks like you.