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Integration

Best Shopify QuickBooks Integration: Import, Categorize, and Track With Ease

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Sync transactions from one or multiple Shopify stores to QuickBooks Online
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Categorize transactions according to your needs
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Easily reconcile transactions to match your bank statement
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Track sales tax liabilities automatically
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How it works

Woman and bookkeeping happy with correct numbers

1. Integrate

Connect Shopify and QuickBooks to the Synder app.

2. Customize

Set up Synder to align perfectly with your business needs.

3. Reconcile

Enjoy streamlined bookkeeping and smooth reconciliation.

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What you get with Shopify and QuickBooks integration

What you get with BigCommerce and Sage Intacct integration

Automated multi-platform data sync

In addition to Shopify, you can connect Amazon, eBay, PayPal, TikTok, and other platforms to QuickBooks with a single integration. Transactions are automatically routed into the correct accounts, categorized by platform, with no duplicates or missed data.

Smart sales & expense categorization

Map transactions exactly how you need them: categorize by product type, location, or sales channel, apply custom rules for fees and taxes, and organize data into the right QuickBooks accounts.

Smooth reconciliation

Synder tracks all Shopify transactions, sales, fees, refund in a clearing account, then transfers the net payout to match your actual bank deposit. When the payout appears in your bank feed, the amounts line up perfectly. Just click "Match",  and you're reconciled.

Inventory & COGS tracking

Synder syncs income, inventory, and COGS automatically across Shopify, as well as Amazon, and all your sales channels. No manual updates, just real-time visibility into revenue, costs, and stock levels.

Accurate sales tax management

Synder handles sales tax automatically across all your platforms. It pulls tax rates from Shopify, maps them to the correct QuickBooks tax codes, and tracks the withholding taxes as well. Your tax records stay accurate and compliant without manual calculations.

Historical data import

Import every past transaction properly categorized from the start. Synder syncs unlimited historical data as far back as Shopify and your other platforms store it, so your books are complete from day one.

Book a demo

Book a demo with our specialist

To find the best solution for your business, book a call with our accounting automation expert. We'll dive into your needs and show how Synder can optimize your bookkeeping processes. Let us walk you through it!

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Discuss your pain points
Find a solution

Shopify + other platforms you use

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30+ pre-built integrations, unlimited custom builds
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Easy multichannel reconciliation
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Unified financial reporting across all platforms
Woman happy with seamless accounting integrations
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Why should you choose Synder?

Compliance-first security

SOC 2 Type 2 certified, GDPR and HIPAA compliant, with end-to-end encryption built in. Synder keeps your data secure, helps you pass audits, and scales safely as you grow.

Reliable support

Synder's support team knows ecommerce accounting inside and out. Get help whenever you need it – chat, email, video call, or screen share. You're never stuck sorting things out alone.

Committed to your needs sync

Set up transactions exactly how you need them: rename line items, pull in custom data, adjust tax codes, and map everything to match your workflow perfectly.

Detailed reporting

Synder breaks down revenue by product, location, payment method, or date, from monthly snapshots to year-end reports. Get the data you need to make decisions. 

What other Synder users say

"Of all the apps that I use to help make QuickBooks more functional, Synder is the one I have the least complaints about. Before Synder, when our bookkeeper had to do it manually, it was taking between 5-10 hours a week of importing data, adding data, changing forms and sheets. With over 150k records now processed automatically, it's been a huge savings of both time and money."

Meghan S.
Operations Manager at Rad
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Accounting software trusted by over 5,000 users and partners
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Based on 3,400+ reviews

FAQ

See other QuickBooks integrations

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